2023-03-08

This is Maëlle's DBGI daily open-notebook.

Today is 2023.03.08

TODO

Check discussion: https://github.com/orgs/digital-botanical-gardens-initiative/discussions
Check Zulip
dbgi meeting presentation

CODE

NOTES

Found another way to visualize with smiles: http://practicalcheminformatics.blogspot.com/2019/11/interactive-plots-with-chemical.html
Doesn't fully work for now...

DBGI meeting

First worked on the sample tracking part => created db with data from iNaturalist & samples info => nocode interface -> directus (http://directus.dbgi.org)

Establishment of a data visualization interface for the DBGI => plotly dashboard (https://dash.gallery/Portal/)

Use of library such as molplotly (https://github.com/wjm41/molplotly)

visualization of spectrum: https://gnps-lcms.ucsd.edu/?usi=mzspec%3AMSV000085852%3AQC_DOM_2%0Amzspec%3AMSV000085852%3AQC_DOM_3%3Ascan%3A62886%0Amzspec%3AMSV000085852%3AQC_DOM_4%3Ascan%3A62886%0Amzspec%3AMSV000085852%3AQC_DOM_5%3Ascan%3A62886%0A&usi2=mzspec%3AMSV000085852%3AQC_DOM_0%3Ascan%3A62886%0Amzspec%3AMSV000085852%3AQC_DOM_1%3Ascan%3A62886%0A%0A&xicmz=271.0315%3B278.1902%3B279.0909%3B285.0205%3B311.0805%3B314.1381&xic_tolerance=0.5&xic_norm=False&xic_file_grouping=FILE&show_ms2_markers=True&ms2_identifier=None

Until now: tried to create a small dashboard to test multiple libraries on LOTUS db

TODO NEXT

Important for redaction

This is Maëlle's DBGI daily open-notebook.

Important for redaction