2022-11-24

This is Maëlle's DBGI daily open-notebook.

Today is 2022.11.24

TODO

• Meeting with pma at 10am
• Show images from url on directus

If everything done before end of day

• go on with the tutorial

Meeting with pma

To discuss:

• dot problem resolved

• Dbgi_id without regex on format module

• Block table on directus (=> when using another user)

• change dbgi_id => DBGI_000000

• Pswd in cronjob

• show images

new TODO after meeting

• dbgi_id without regex
• url on directus
• show images

CODE

Show images from url on directus

Could maybe create a script to convert
=> install directus CLI

sudo npm install -g @directus/cli

Connect to instance:

npx directusctl instance connect --instance directus_dbgi*

Help:

npx directusctl --help

dbgi_id without regex

for i in range(len(df)):          
  dct = dict()         
  if df.ofvs[i] is not np.nan:       
    ls = df.ofvs[i].replace(' ','').replace('\'','')        
    for j in ls.split(','):        
      j = j.split(':')         
      dct[j[0]] = j[1]          
      if dct['name_ci'] == 'emi_external_id':           
        print(dct['value_ci'], i)        
        df.at[i,'dbgi_id'] = dct['value_ci']      

Works on jupyter notebook but not on format_module.py ....
Error: ls = df.ofvs[i].replace(' ','').replace('\'','') AttributeError: 'list' object has no attribute 'replace'

TODO NEXT

• dbgi_id without regex
• url on directus
• show images