2023-04-05

This is PMA's DBGI daily open-notebook.

Today is 2023.04.05

Todo today

Have a look at the DBGI discussion forum

- https://github.com/orgs/digital-botanical-gardens-initiative/discussions

Doing

OpenBIs admin workshop

Dear all,

We would like to provide you with some information for the upcoming openBIS admin training on 05.04.2023 at 09:00-12:30.

```
  openBIS access
```
In our training we will use this openBIS instance:

ELN interface: https://openbis-training.ethz.ch/openbis/webapp/eln-lims/? Admin interface: https://openbis-training.ethz.ch/openbis/webapp/openbis-ng-ui/

Please try to login before the training and let us know as soon as possible if you encounter any issues.

```
  Training material
```
The material we will use during the training can be found here:

https://gitlab.ethz.ch/sis-rdm-training/openbis-training/-/tree/master/3_openbis_admin_training

The material contains:

openBIS-admin-tutorial.docx: A tutorial with practical exercises we will do together.
openBIS-admin-training.pdf: slides that will accompany the exercises.
masterdata.xls: masterdata file needed for one of the exercises.

Please download the training material BEFORE the training.

If you encounter any issues, please let us know in advance. 3. Zoom link

We will use the following zoom link for the training:

https://ethz.zoom.us/j/64290626872

Meeting ID: 642 9062 6872

We are looking forward to seeing you all on Wednesday!

Best regards,

Slides by Caterina

ElN and an Admin interfaces

Concepts

Thre components

Inventory Management
ELN
Data Management

Inventory is shared by all group members

Samples/Material
Protocols
Instruments

In the ELN :

Personal space
Project Spaces

Both describe experiments

Collections/Objects and Datasets haves types Types are defined by their metadata

3 web UI

CoreUI (deprecated)
ELN UI
New Admin I

Application case

We have a sample for which we want to measure the mass loss at given t and p

Note: Codes CANNOT be changed after registration. This statement is valid for codes anywhere in openBIS.

API

Java and Python API No REST API

Ask for this support ! This should help to stick to existing ontologies

Forum

https://openbis.ch/index.php/community-forum/

And else through issuing a ticket

It is also possible to export an OpenBis

Jython scripts for Dynamic properties

create User from the ELN interface
Edit and fine tune in the Admin interfaces

Paused

Done

Notes

Todo tomorrow

Today I learned that