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2023-02-10

This is PMA's DBGI daily open-notebook.

Today is 2023.02.10

Todo today

Draft a program for the 22nd meeting

Check with Manu

9:30 Start

  • Coffee ☕ (10 min)

  • Round table : short presentation 30 sec per person (10 min)

  • Program of the day (10 min)

  • Some background on Ecometabolomics & Natural Products based drug discovery - preliminary works and the origins of DBGI. Manu 10-15 min

  • DBGI & EMI. PMA 10-15 min

  • What has been done until now ?

    • DBGI wet lab Pilot UniFr/UniNe. Edouard 10 min
    • DBGI data management pilot UniFr. Maëlle 10 min

  • Coffee Break ☕ (10 min)

  • The DBGI-KM structure

    • Personnel
      • 1 FTE (1.5 years) Postdoc UniFr (discuss CV)
      • 1 FTE (1 year) Postdoc UniNe (discuss CV)
      • 0.5 FTE (2years) inhouse computational data scientist ETHZ-SIS (establish exactly who ?)
      • 1 FTE (1.5years) inhouse computational data scientist SIB (establish exactly who ?)
    • Gant chart (Who does what when ?)
    • Communication

  • Lunch break (1:30)

  • Dendron Workshop + Open Science discussion + Communication means

    • RIO Special collection
    • Publication of the ChordB proposal

  • Zulip, Github Discussions

https://github.com/orgs/digital-botanical-gardens-initiative/discussions

Encouraged but should not be a brake to implication and development

  • Collection of specimens & Legal aspects
    • Anne-Laure JBN, Donat, Nadir, Blaise, Gregor

What do we have ? What do we want ? For now UniFr / UniNe

Private Partner Orchids GreeenHouse (EMI/DBGI ?)

  • WP2 Sample tracking system establishment

    • physical objects
      • living specimens (look trough the window)
      • dried tissues collections (bring Tubes)
      • extracts (Tubes)
    • digital objects
      • iNat
      • Directus
      • MassIVE
      • Physical samples tracking

  • WP3 Knowledge representation and graph establishment

  • WP4 Human-Data Interaction

What do we have ? What do we want ?

  • WP5 Community Engagement, Public Outreach & Biodiversity Conservation

What do we have ? What do we want ?

  • Varia

Doing

Paused %>%

Done

Have a look at the DBGI discussion forum

- https://github.com/orgs/digital-botanical-gardens-initiative/discussions

Reformated notes traits

So has to have the an open-notebook-dbgi. hiererachy which can live with other open-notebook-xxxx- files Updated templates accordingly

Notes

Todo tomorrow

Today I learned that