2023-07-27

This is PMA's DBGI daily open-notebook.

Today is 2023.07.27

Todo today

Have a look at the DBGI discussion forum

- https://github.com/orgs/digital-botanical-gardens-initiative/discussions

Doing

Point Edouard

Looking into the noveltries of the qfield app -dpownload on deggoglzided android --- semms to work fine

Think about using a defined taxonomy for the field called "sample_name" rather than an excel list per garden. For example we could use the https://tree.opentreeoflife.org/about/taxonomy-version/ott3.5

When using QGis we should make sure to use only LTS releases https://qgis.org/en/site/

Addition of 2 tabs "individual metadata" and "environmental metadata" (on top of the main "sample metadata")

Define which field we want
We should define which controlled vocabularies are used to fill the newly proposed fields

For e.g. root is could be fetched from the Plant Ontology https://www.ebi.ac.uk/ols4/ontologies/po/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FPO_0009005 PO:0025004

Phenology

Flowering stage https://www.ebi.ac.uk/ols4/ontologies/po/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FPO_0007616?lang=en

Where are the other stages e.g fruiting

IPEN and related individuals identifiers

Peek into ENVO and ECOCORE

E.g. humus https://www.ebi.ac.uk/ols4/ontologies/envo/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FENVO_01000000?lang=en

E.g Rain https://www.ebi.ac.uk/ols4/ontologies/envo/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FENVO_01001564

Herbivory https://www.ebi.ac.uk/ols4/ontologies/ecocore/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FECOCORE_00000020

https://www.ebi.ac.uk/ols4/ontologies/ecocore https://www.ebi.ac.uk/ols4/ontologies/envo

For Edouard

Readlist

And a constraint to the sample_name field so that the "unknown" value is automatically enforced when the "no_name_on_list" button is checked.

Dig a bit the Directus tuto's https://www.dbgi.org/dendron-dbgi/notes/dy871a7dv1wcjmkvrte9ex7/

Created a new test layer in the JBUF project on QGis Also synced it with Qfield Added and additonal field with a constrained vocabulary (helicity l/r)