2024-02-26

This is PMA's DBGI daily open-notebook.

Today is 2024.02.26

Todo today

Have a look at the DBGI discussion forum

- https://github.com/orgs/digital-botanical-gardens-initiative/discussions

Doing

Diving in the Emi-portal

We are on the web branch of the emi-monorepo

JSON web token (JWT) is a standard used to create access tokens for an application. It works this way: the server generates a token that certifies the user identity, and sends it to the client. The client will send the token back to the server for every subsequent request, so the server knows the request comes from a particular identity. This token is signed by a secret key, so the server is able to verify if the token is legitimate.

REdis is a memory only DB, so it is not persistent. It is used for caching and session management. It is also used for pub/sub messaging. One single layer hash map storing key-value pairs.

Paused

Done

Notes

Instructions from Thomas Henkel

Bonjour Pierre-Marie,

je te confirme ton intervention pour ce mercredi à 13h30 au Learning Lab (PER 21 B205).

Il s’agit de présenter ton projet de recherche :

Présentation du projet : objectifs, durée, organisation, qui fait quoi etc. (5-10 min.)

Will reuse presentations.

Mass-specs, computers and Linked Open Data for chemodiversity characterisation at the global scale. Earth Metabolome Initiative semantic model workshop intro - What is the stuff we are talking about ? Digital Botanical Gardens & Earth Metabolome : two aligned iniatives P-79

Le travail avec les données : collecte, stockage, traitement et analyse des données ; forme des donnes ; versioning ; infrastructure, outils et standards utilisés, archivage etc.

iNaturalist DBGI project webpage : https://www.inaturalist.org/projects/digital-botanical-gardens-initiative http://directus.dbgi.org/

Future is at https://github.com/earth-metabolome-initiative/emi-monorepo

DBGI Dendron: https://www.dbgi.org/dendron-dbgi/

https://github.com/digital-botanical-gardens-initiative

https://enpkg.commons-lab.org/graphdb/

https://riojournal.com/topical_collection/215/

https://zenodo.org/communities/earth-metabolome/records?q=&l=list&p=1&s=10&sort=newest https://zenodo.org/communities/dbgi-zenodo-repository/records?q=&l=list&p=1&s=10&sort=newest https://zenodo.org/communities/commons-lab-repository/records?q=&l=list&p=1&s=10&sort=newest

Cette partie peut aussi comporter des démonstrations. (30-40 min.)