2023-03-16
This is PMA's DBGI daily open-notebook.
Today is 2023.03.16
Todo today
Have a look at the DBGI discussion forum
- https://github.com/orgs/digital-botanical-gardens-initiative/discussions
Doing
Meeting Ruch Donat
https://github.com/orgs/digital-botanical-gardens-initiative/discussions/11
JNP
https://pubs.acs.org/doi/10.1021/acs.jnatprod.2c00978 2023 Latest one https://pubs.acs.org/doi/10.1021/acs.jnatprod.2c01032 2023 Full series of complex molecules. R groups. Both biological targets and sources organisms in the abstract. https://pubs.acs.org/doi/10.1021/np200715v 2011 I know this one well https://pubs.acs.org/doi/pdf/10.1021/np010258i 2001 2000's https://pubs.acs.org/doi/10.1021/np50002a005 1979 Dinosaur
Phytochemistry
https://www.sciencedirect.com/science/article/pii/S0031942223000262 2023 Latest one https://www.sciencedirect.com/science/article/pii/S0031942223000286 2023 Recent. Has synthesis https://www.sciencedirect.com/science/article/pii/S0031942212003469 2012 I know this one well https://www.sciencedirect.com/science/article/pii/S0031942299001831 1999 2000's https://sci-hub.st/10.1016/S0031-9422(00)82809-5 1961 Dinosaur
If somebody on your side would have a couple of hours to look at the articles and see, whether a journal has one style over the last 20 years, or when the style changed, that would also be helpful.
I start with JNP and look here https://pubs.acs.org/loi/jnprdf Indeed the https://pubs.acs.org/action/doSearch?SeriesKey=jnprdf&AllField=* doesnt offer clear date searching menu ...
2009
2019
2023
From Vol83. issue 4 (April 2020) until today we have format with the grey abstract
Provide 10 pdfs
https://pubs.acs.org/doi/10.1021/np100882h
Provide 10 pdfs
From Vol74. issue 2 (Feb 2011) until Vol83. issue 3 we have the format with the yellow abstract
(From Donat)
Here is the template to prepare the bibliographic citations for the use of the publications in the TNA
Example: https://docs.google.com/spreadsheets/d/16F5tO0MvDuzD5aFoqdH_Vwbt6vtJT9fsJRTUP5d_NTo/edit#gid=0 Template to be copied and used: https://docs.google.com/spreadsheets/d/1JAxI4uBLS9lhhtP9iyhOQPOHsSMqywjCYfIcqUIMCKU/edit#gid=0
-rw-r--r--@ 1 pma staff 2894552 Mar 16 12:31 acs.jnatprod.2c00978.pdf -rw-r--r--@ 1 pma staff 2213582 Mar 16 12:39 acs.jnatprod.2c01032.pdf -rw-r--r--@ 1 pma staff 63644 Mar 16 12:37 np010258i.pdf -rw-r--r--@ 1 pma staff 1160622 Mar 16 12:32 np200715v.pdf -rw-r--r--@ 1 pma staff 393127 Mar 16 12:36 np50002a005.pdf
acs.jnatprod.2c00978.pdf acs.jnatprod.2c01032.pdf np010258i.pdf np200715v.pdf np50002a005.pdf
Looking into https://github.com/MicheleCotrufo/pdf2doi
And https://github.com/MicheleCotrufo/pdf2bib
pdf2bib is working smoothly. Ask Donat if they can handle bibtex file rather than the gdocs
- Ask IT if possible to open UniFR VPN to external email account
Adriano will give Patrick the set of papers curated manually and the LOTUS outputs (filtered for the one already present in PMC)
Apparently it would be possible to ask for a UniFR access see https://my.unifr.ch/group/res/compte-pour-externes
Paused
Done
Notes
https://www.printables.com/model/424604-thermo-scientific-vanquish-autosampler-trayfreezer
Could be useful for stock of samples in freezer and injection on the Vanquish. Removes the step of getting out each of the samples and replacing in the trays.