2023-10-21

This is PMA's DBGI daily open-notebook.

Today is 2023.10.21

Todo today

Have a look at the DBGI discussion forum

- https://github.com/orgs/digital-botanical-gardens-initiative/discussions

Doing

Hammering the dirty ENPKG pipeline in

Paused

Done

Drafted BiCIKL TNA report and shared it with DBGI members and BiCIKL partners.

https://docs.google.com/document/d/1oPtUilINv5dI59xSWWPQw155corbx5Tw/edit

curl -s "https://api.github.com/repos/boecker-lab/sirius/releases/latest" | jq -r '.assets[] | select(.name | contains("linux")) | .browser_download_url'

curl -s "https://api.github.com/repos/boecker-lab/sirius/releases/latest" | jq -r '.assets[] | select(.name | contains("linux") and (.name | endswith(".zip"))) | .browser_download_url'

http://fasst.gnps2.org/fastsearch/?usi1=mzspec%3AMSV000087728%3AVGF155_E10_features_ms2_pos.mgf%3Ascan%3A75&precursor_mz=None&charge=None&library_select=gnpsdata_index&analog_select=No&delta_mass_below=130&delta_mass_above=200&pm_tolerance=0.05&fragment_tolerance=0.05&cosine_threshold=0.7&use_peaks=0#%7B%22peaks%22%3A%20null%7D

https://fasst.gnps2.org/fastsearch/?usi1=mzspec:MSV000087728:VGF155_E10_features_ms2_pos.mgf:scan:80

http://fasst.gnps2.org/fastsearch/?usi1=mzspec%3AMSV000087728%3AVGF150_F11_features_ms2_pos.mgf%3Ascan%3A102&precursor_mz=None&charge=None&library_select=gnpslibrary&analog_select=No&delta_mass_below=130&delta_mass_above=200&pm_tolerance=0.05&fragment_tolerance=0.05&cosine_threshold=0.7&use_peaks=0#%7B%22peaks%22%3A%20null%7D

https://fasst.gnps2.org/fastsearch/?usi1=mzspec:MSV000087728:VGF150_F11_features_ms2_pos.mgf:scan:102 https://fasst.gnps2.org/fastsearch/?usi1=mzspec:MSV000087728:VGF150_F11_features_ms2_pos.mgf:scan:102&library_select=gnpslibrary

Notes

Todo tomorrow, one day ... or never

Today I learned that