2024-11-13
This is PMA's DBGI daily open-notebook.
Today is 2024.11.13
Todo today
Have a look at the DBGI discussion forum
- https://github.com/orgs/digital-botanical-gardens-initiative/discussions
Doing
Paused
Done
Notes
Disha :
- stable solution to host the triples (a machine with machines)
- automatize the alignement between datasources
- start collect in other gardens
- connect the instrument
- mechanism to welcome EMI members
- finishing a solid foundation for the EMI portal
- discussion of the datastructure for the graph
- implement taxonomic resolution earlier in the process and coverage
- finalize the sample tracking system
- finalizing the gardens collected.
- align with other biodiversity collection initioative eg. genome collection campaigns
European Open Science clouds (EOSC) - https://open-science-cloud.ec.europa.eu/
EMI ontology
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SOSA - https://www.w3.org/TR/vocab-ssn/ Sensor, Observation, Sample, Actuator (SOSA) ontology
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qudt - https://www.qudt.org/ Quantities, Units, Dimensions and Data Types in OWL and XML
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SKOS based Open Tree of Life - https://opentreeoflife.github.io/ott/ Open Tree of Life
https://www.dbgi.org/earth_metabolome_ontology
https.//sib-swiss.github.org/sparql-editor
DublinCore - https://dublincore.org/
https://www.globalbioticinteractions.org/
https://github.com/globalbioticinteractions/globalbioticinteractions
The physical object category at Zenodo could be used to attribute PID to physical objects. See https://zenodo.org/records/13967743