2024-01-08

This is PMA's DBGI daily open-notebook.

Today is 2024.01.08

Todo today

Have a look at the DBGI discussion forum

- https://github.com/orgs/digital-botanical-gardens-initiative/discussions

Doing

Meeting with Justin Reese and Luca

to discuss bio KGs, biolink and KGhub, and possible overlaps with the https://www.dbgi.org/ and https://www.earthmetabolome.org/ projects.

KGhub: https://kghub.org/ KGx:

https://github.com/Knowledge-Graph-Hub/knowledge-graph-hub-support/blob/main/kg-hub-tutorials/KG-Hub%20Tutorial%201%20-%20Getting%20Started.ipynb

https://academic.oup.com/bioinformatics/article/39/7/btad418/7211646

.ttl to .nt conversion

Failed to convert Literal lexical form to value. Datatype=http://www.w3.org/2001/XMLSchema#integer, Converter=<class 'int'> Traceback (most recent call last): File "/home/allardpm/anaconda3/envs/graph_builder/lib/python3.9/site-packages/rdflib/term.py", line 2084, in _castLexicalToPython return conv_func(lexical) # type: ignore[arg-type] ValueError: invalid literal for int() with base 10: '359.0'

Adressed by https://github.com/enpkg/enpkg_full/commit/2e1d9c701687063e58d9f6bd0bb63704361d323b